PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000216205
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 485aa    MW: 54845.2 Da    PI: 4.724
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000216205genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.25.9e-31722121128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 
                    lp+G++F+Ptd+e++++ L+k+  g++     ++++  i +vd    i+ ++P++Lp +vk + +  +fF+++ k+y+tg+rk+r+++      + 
  MDP0000216205  72 LPKGVKFDPTDQEIMWHLLAKSGVGDQkphpfIDEF--ILTVDddegICCSHPRKLP-NVKLDGSPSHFFHRAIKAYNTGTRKRRKIHdgdgdgDV 164
                    799**************9999966555476543332..433322344**********.667788999******************97644443355 PP

            NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                    +W++tg++k+v+  +g + g+kk++v+y  +    k++kt+Wvmh+y+l
  MDP0000216205 165 RWHKTGRTKPVIL-DGVQRGCKKIMVLYmsTVXGGKPVKTNWVMHQYHL 212
                    7************.99************5434667778*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-3857231IPR003441NAC domain
PROSITE profilePS5100530.05772231IPR003441NAC domain
PfamPF023651.8E-1373212IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MGAADCFKCN HLCNTCRPSW LFDKNRIATK IRSASGSYDS VGIKWQSNPT KSCPKCQYTM  60
DNSDVAQEWP GLPKGVKFDP TDQEIMWHLL AKSGVGDQKP HPFIDEFILT VDDDEGICCS  120
HPRKLPNVKL DGSPSHFFHR AIKAYNTGTR KRRKIHDGDG DGDVRWHKTG RTKPVILDGV  180
QRGCKKIMVL YMSTVXGGKP VKTNWVMHQY HLGIEEDEKD GEYVISKIYY QQQEAKQADK  240
TDQDVPESID AVITKVDPVT PKXATPEPPR AERKLGDFXL GLDTPAPSRD PXLQILIWAY  300
FYGFCIQLKY REEDGAEDEV RPDVDSALDE VHPEVNRAED VRPESEIPDD YDQHKVENQA  360
DEVINNTENI DHAQEDPKWW DNESQNLLDS QQLVEGLSLC DELLQSQSPN RGGHENGEQA  420
HVKPRLADYA KLGPEDLKKD LEACQNIVLD PANIMDLDTP PDFRLSQLEF GSQESFLSWG  480
GKVAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-147223720174NAC domain-containing protein 19
3swm_B4e-147223720174NAC domain-containing protein 19
3swm_C4e-147223720174NAC domain-containing protein 19
3swm_D4e-147223720174NAC domain-containing protein 19
3swp_A4e-147223720174NAC domain-containing protein 19
3swp_B4e-147223720174NAC domain-containing protein 19
3swp_C4e-147223720174NAC domain-containing protein 19
3swp_D4e-147223720174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389315.10.0PREDICTED: NAC domain-containing protein 8
SwissprotQ6NQK21e-171NAC8_ARATH; NAC domain-containing protein 8
TrEMBLM5XB160.0M5XB16_PRUPE; Uncharacterized protein
STRINGVIT_01s0011g02990.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56623354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-172NAC family protein